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Phylogeny of Onobrychis sect. Hymenobrychis (Fabaceae) based on chloroplast DNA sequence data | ||
Iranian Journal of Genetics and Plant Breeding | ||
مقاله 2، دوره 5، شماره 2 - شماره پیاپی 10، دی 2016، صفحه 11-22 اصل مقاله (1.38 M) | ||
شناسه دیجیتال (DOI): 10.30479/ijgpb.2016.1167 | ||
نویسندگان | ||
Fatemeh Hajmoradi* 1؛ Massoud Ranjbar2؛ Michelle Waycott3؛ Kor-jent Van Dijk3 | ||
1Department of Biology, Payame-Noor University, P. O. Box: 19395-3697, Tehran, Iran. | ||
2Department of Biology, Herbarium division, Bu--Ali Sina University, Hamedan, Iran. | ||
3School of Earth and Environmental Sciences, The University of Adelaide, Adelaide, 5001, South Australia, Australia. | ||
تاریخ دریافت: 22 مهر 1396، تاریخ پذیرش: 22 مهر 1396 | ||
چکیده | ||
Phenetic analysis of morphological characters in different species of Onobrychis Miller sect. Hymenobrychis DC. (Fabaceae), classified them in two main groups based on corolla features. To determine the phylogenetic relationships among the 13 species, chloroplast DNA sequences were used. Analysis of these data resulted in a well-resolved and well-supported phylogeny. Phylogenies generated by maximum likelihood show monophyly of O. sect. Hymenobrychis and the division of the section into two major clades. The first branching clade was formed by all the species of the section with large flowers, a yellowish corolla with or without venation and some species having a larger chromosome number (x=8 vs x=7). The second major clade includes the remaining species studied, all of which have small flowers, a yellowish corolla with or without venation or purple maculae and the common number of chromosomes (x=7). The compliance of the molecular, morphological and cytogenetic data indicates that x=8 is ancestral in the section and x=7 are derived through an aneuploid loss of a chromosome. The resulting phylogeny suggests the Zagros area as an origin of evolution in the sect. Hymenobrychis, followed by a radiation to the Alborz area in Iran. | ||
کلیدواژهها | ||
Chloroplast DNA؛ Molecular phylogeny؛ Onobrychis؛ Sect. Hymenobrychis | ||
عنوان مقاله [English] | ||
فیلوژنی (Onobrychis sect. Hymenobrychis (Fabaceae بر اساس داده های توالی DNA کلروپلاستی | ||
نویسندگان [English] | ||
فاطمه حاج مرادی1؛ مسعود رنجبر2؛ میشل وایکت3؛ کورجنت ون دیک3 | ||
1گروه زیست شناسی، دانشگاه پیام نور، تهران، ایران، کدپستی: 3697-19395. | ||
2گروه زیست شناسی، بخش هرباریوم، دانشگاه بوعلی سینا، همدان، ایران. | ||
3دانشکده علوم زمین و زیست محیطی ، دانشگاه آدلاید، استرالیا. | ||
چکیده [English] | ||
آنالیز فنتیکی ویژگیهای مورفولوژیکی، گونههای مختلف بخش .Hymenobrychis DC از جنس Onobrychis Miller را بر اساس ویژگیهای گل در دو گروه اصلی قرار داد. در این مطالعه به منظور تعیین روابط بین گونه ای در 13 گونه از این بخش، از توالی DNA کلروپلاستی استفاده گردید. آنالیز دادههای بدست آمده منجربه ایجاد درخت فیلوژنی با حمایت بالا شد. فیلوژنی ساخته شده توسط شانس بیشینه، بیانگر تک نیایی بخش Hymenobrychis بوده و بخش مورد نظر را به دو کلاد بزرگ تقسیم کرد. شاخه اول کلاد شامل گونههایی با گلهای بزرگ و عدد کروموزومی 7=x و 8=x می باشند. کلاد دیگر شامل گونههایی با گلهای کوچک و عدد کروموزومی 7=x میباشد. نتایج حاصل از انطباق دادههای مولکولی و سیتوژنتیکی در بخش مورد مطالعه نشان داد که احتمالا 8=x عدد پایه کروموزومی اجدادی است و 7=x از کاهش آنیوپلوییدی به وجود آمده است. بر مبنای نتایج فیلوژنی منطقه زاگرس به عنوان منشا تحول در بخش Hymenobrychis در ایران پیشنهاد میشود و در ادامه پراکندگی آن به منطقه البرز تایید میگردد. | ||
کلیدواژهها [English] | ||
توالی DNA کلروپلاستی, فیلوژنی مولکولی, جنس Onobrychis, بخش Hymenobrychis | ||
مراجع | ||
Abou-el-Enian M. M. (2002). Chromosomal criteria and their phylogenetic implications in the genus Onobrychis Mill. sect. Lophobrychis (Leguminosae), with special reference to Egyptian species. Botanical Journal of Linnaean Society, 139(4): 409–414.
Ahangarian S., Kazempour Osaloo S. H., and Maassoumi A. A. (2007). Molecular phylogeny of the Hrdysareae with special reference to Onobrychis (Fabaceae) as inferred from nr DNA ITS sequences. Iranian Journal of Botany, 13(2): 64–74.
Amirahmadi A., Kazempour Osaloo1 S. H., and Maassoumi A. A. (2010). Loss of chloroplast trnLUAA intron in two species of Hedysarum (Fabaceae): evolutionary implications. Iranian Journal of Biotechnology, 8: 150–155
Arsalan A., and Ertugrul K. (2010). Genetic relationships of the genera Onobrychis, Hedysarum, and Sartoria using seed storage proteins. Turkish Journal of Biology, 34: 67–73
Ashurmetov O. A., and Normatov B. A. (1998). Embryology of annual species of the genus Onobrychis Mill. Flora, 193(3): 259–267.
Asmussen C. B., and Liston A. (1998). Chloroplast DNA characters, phylogeny, and classification of Lathyrus (Fabaceae). American Journal of Botany, 85: 387–401.
Bell C. D., and M. J. Donoghue. (2005). Phylogeny and biogeography of Valerianaceae (Dipsacales) with special reference to the South American valerians. Organisms, Diversity, &. Evolution, 5: 147–159.
Boissier P. E. (1872). Flora Orientalis: Sive Enumarito Plantarum in Oriente, A Graecia et Aegypto ad Indiae fines hueusque observatarum. Geneva: Basilease and Lugundi, 2: 545–553.
Bruneau A. (1996). Phylogenetic and biogeographical patterns in Erythrina (Leguminosae: Phaseoleae) as inferred from morphological and chloroplast DNA characters. Systematic Botany, 21: 587–605.
Cros J., Combes M. C., Trouslot P., Anthoy F., Hamon S., Charrier A., and Lashermes P. (1998). Phylogenetic analysis of chloroplast DNA variation in Coffea L. Molecular Phylogenetics and Evolution, 9: 109–117.
Demesure B., Comips B., and Petit R. J. (1996). Chloroplast DNA phylogeography of the common beech (Fagus sylvatica L.) in Europe. Evolution, 50: 2515–2520.
Demesure B., Sodzi N., and Petit R. J. (1995). A set of universal primers for amplification of polymorphic non-coding regions of mitochondrial and chloroplast DNA in plants. Molecular Ecology ,4: 129–131.
Drummond A. J., Ashton B., Buxton S., Cheung M., Cooper A., Duran C., Field M., Heled J., Kearse M., and Markowitz S. (2011). Geneious, v 5.4. Available from http://www.geneious.com.
Dumolin-Lapègue S., Demesure B., Fineschi S., Le Corre V., and Petit R. J. (1997). Phylogeographic structure of white oaks throughout the European continent. Genetics, 146: 1475–1487.
El Mousadik A., and Petit R. J. (1996). Chloroplast DNA phylogeography of the argan tree of Morocco. Molecular Ecology, 5: 547–555.
Emre I., Turgut-balik D., Sahin A., and Kursat M. (2007). Total electrophoretic band patterns of some Onobrychis species growing in Turkey. American-Eurasian Journal of Agricultural and Environmental Sciences, 2: 123–126.
Felsenstein J. (1985). Confidence limits on phylogenies: an approach usingthe bootstrap. Evolution, 39: 783–791.
Fennell S. R., Powell W., Wright F. Ramsay G., and Robble W. (1998). Pyhylogenetic realtionships between Vicia faba (Fabaceae) and related species infrerred from chloroplast trnL sequences. Plant Systematic and Evolution, 212: 247–259.
Gernandt D. S., Liston A., and Pinero D. (2003). Phylogenetics of Pinus subsections Cembroides and Nelsoniae inferred from cpDNA sequences. Systematic Botany, 28: 657–673.
Gielly L., and Taberlet P. (1994). The use of chloroplast DNA to resolve plant phylogenies: noncoding versus rbcL sequences. Molecular Biology and Evolution, 11: 769–777.
Gielly L., Yuan Y. M., Kupfera P., and Taberlet P. (1996). Phylogenetic use of noncoding regions in the genus Gentiana L.: chloroplast trnL (UAA) intron versus nuclear ribosomal internal transcribed spacer sequences. Molecular Phylogenetics and Evolution, 5: 460–466.
Goldblatt P. (1981). Cytology and the phylogeny of Leguminosae. In: R. M. Polhill, P. H. Rave (Eds), Advances in legume systematics, Part 2. Kew, UK: Royal Botanic Gardens, 427–463.
Hayot Carbonero C., Carbonero F., Smith L. M. J., and Brown T. A. (2012). Phylogeny characterisation of Onobrychis species with special focus on the forage crop Onobrychis viciifolia Scop. Genetic Resources and Crop Evolution, 59: 1777–1788.
Hesamzadeh Hejazi S. M, and Ziaei Nasab M. (2010). Cytotaxonomy of some Onobrychis (Fabaceae) species and populations in Iran. Caryologia, 63(1):18–31.
Hiratsuka J., Shimada H., Whittier R., Ishibashi T., Sakamoto M., Mori M., Kondo C., Honji Y., Sun C. R., Meng B. Y., Li Y. Q., Kanno A., Nishizawa Y., Hirai A., Shinozaki K., and Sugiura M. (1989). The complete sequence of the rice (Oryza sativa) chloroplast genome: Intermolecular recombination between distinct tRNA genes accounts for a major plastid DNA inversion during the evolution of the cereals. Molecular and General Genetics, 217: 185–194.
Kovach W. (1985-2002). Institute of Earth Studies, University college of Wales, Aberystwyth, (Shareware), MVSP Version 3.2., http://www.kovcomp.com/MVPs/downl2.html.
Maguiret L., Conrang J. G. Collinsa G., and Sedgley M. (1997). Molecular analysis of interspecific and intergeneric relationships of Banksia using RAPDs and non-coding chloroplast DNA sequences. Theoretical and Applied Genetics, 95: 253–260.
Matlab 8.0 and Statistics Toolbox 8.1, The MathWorks, Inc., Natick, Massachusetts, United States.
Ohyama K., Fuguzawa H., Kohch T., Shirai H., Sano T., Sano S., Umesono K., Shiki Y., Takeuchi M., Change Z., Aota S., Inokuchi H., and Ozeki H. (1986). Complete nucleotide sequence of liverwort Marchantia polymorpha chloroplast DNA. Plant Molecular Biology Reporter, 4: 148–175.
Olmsteadr G., and Palmer J. D. (1994). Chloroplast DNA systematics: a review of methods and data analysis. American Journal of Botany, 81: 1205–1224.
Petit R. J., Pineau E., Demesure B., Bacilieri R., Ducousso A., and Kremer A. (1997). Chloroplast DNA footprints of postglacial recolonization by oaks. Proceedings of the National Academy of Sciences USA, 94: 9996–10001.
Rechinger K. H. (1984). Flora Iranica. In: K. H. Rechinger (Ed),Akademische Druck-u.-Verlagsanstalt, Graz, Onobrychis, 157: 389–459.
Ranjbar M. (2009). Onobrychis oshnaviyehensis sp. nov. (sect. Hymenobrychis, Fabaceae) from Iran. Nordic Journal of Botany, 27: 1–5.
Ranjbar M., Hajmoradi F., and Karamian R. (2010a). Mitotic study of some species of Onobrychis sect. Hymenobrychis DC. in Iran. Iranian Journal of Plant Biology, 1: 47–54.
Ranjbar M., Hajmoradi F., and Karamian R. (2011). Meiotic chromosome number and behaviour of Onobrychis alborzensis (Fabaceae): a new species from northern Iran. Feddes Repertorium, 122: 1–12.
Ranjbar M., Hajmoradi F., and Karamian R. (2012). An overview on cytogenetics of the genus Onobrychis (Fabaceae) with special reference to O. sect. Hymenobrychis from Iran. Caryologia, 65(3): 187–198.
Ranjbar M., and Hajmoradi F. (2014). A contribution to Onobrychis sect. Hymenobrychis (Fabaceae) in East of Iran. Biological Diversity and Conservation, 7: 86–95.
Ranjbar M., Karamian R., and Hadadi A. (2010d). Cytosystematics of three Onobrychis species (Fabaceae) in Iran. Caryologia, 63: 237–249.
Ranjbar M., Karamian R., and Hajmoradi F. (2009). Taxonomic notes on Onobrychis sect. Hymenobrychis (Fabaceae, Hedysareae) in Iran. Novon, 19: 215–218.
Ranjbar M., Karamian R., and Hajmoradi F. (2010b). Chromosome number and meiotic behavior of two populations of Onobrychis chorassanica Bunge sect. Hymenobrychis in Iran. Journal of Cell and Molecular Research, 2: 49–55.
Ranjbar M., Karamian R., and Vitek, E. (2010e). Onobrychis bakuensis (Fabaceae), a new species from Azerbaijan. Annales Botanici Fennici, 47: 233–236.
Ranjbar M., Karamian R., and Vitek E. (2010f). Notes on Onobrychis sect. Hymenobrychis (Fabaceae) in Tajikistan, with the description of a new species. Nordic Journal of Botany, 28: 1–4.
Ranjbar M., Karamian R., and Afsari S. (2010c). Meiotic chromosome number and behaviour of Onobrychis avajensis (Fabaceae): a new species from western Iran. Plant Ecology and Evolution, 143(2):170–175.
Safaei-Chaeikar S., Ghanavati F., Mozafari J., Naghavi M. R., Amirabadizadeh H., and Darvish F. (2012). Phylogenetic relationships of Onobrychis Mill. (Fabaceae: Papilionoideae) based on ITS sequences of nuclear ribosomal DNA and morphological traits. Crop Breeding Journal, 2(2): 91–99.
Sa´nchez-Ye´lamo M. D. (2006). Rapid characterization of some species of the genus Onobrychis Miller (Leguminosae: Papilionoideae) by isozyme methods. Seed Science and Technology, 34: 297–306
Shinozaki K., Ohme M., Tanaka M., Wakasugi T., Hayashida N., Matsubayashi T., Zaita N., Chunwongse J., Obokata J., Yamaguchi-Shinozaki K., Ohto C., Torazawa K., Meng B. Y., Sugita M., Deno H., Kamogashira T., Yamada K., Kusuda J., Takaiwa F., Kato A., Tohdoh N., Shimada H., and Sugiura M.(1986). The complete nucleotide sequence of the tobacco chloroplast genome. Plant Molecular Biology Reporter, 4: 110–147.
Taberlet P., Gielly L., Pautou G., and Bouvet J. (1991). Universal primers for amplification of three non-coding regions of chloroplast DNA. Plant Molecular Biology, 17:1105–1109.
Toluei Z., Atri M., Ranjbar M., and Wink M. (2012). Morphological, genetical and ecogeneographical characterization of long-winged species of Onobrychis sect. Onobrychis (Fabaceae) in Iran. Iranian Journal of Botany, 18: 31–41.
Vovilov N. I. (1951). The origin, variation, immunity and breeding of cultivated plants. Chron Botany, 13(1/6): 1–366.
Yildiz B., Ciplak B., and Aktoklu E. (1999). Fruit morphology of sections of the genus Onobrychis Miller (Fabaceae) and its phylogenetic implications. Israel Journal of Plant and Sciology, 47(4): 269–282.
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