The Role of virulence gene inducing factors in the improvement of in planta transformation of wheat (Triticum aestivum)

Abhinandan K., Skori L., Stanic M., Hickerson N., Jamshed M., and Samuel M. A. (2018). Abiotic stress signaling in wheat–an inclusive overview of hormonal interactions during abiotic stress responses in wheat. Frontiers in Plant Science, 9: 734.

Allard R. W. (1960). Principles of Plant Breeding. John Wiley and Sons.

Ashrafi-Dehkordi E., Alemzadeh A., Tanaka N., and Razi H. (2021). Effects of vacuum infiltration, Agrobacterium cell density and acetosyringone concentration on Agrobacterium-mediated transformation of bread wheat. Journal of Consumer Protection and Food Safety, 16(1): 59–69.

Bechtold N., Ellis J., and Pelletier G. (1993). In planta Agrobacterium mediated gene transfer by infiltration of adult Arabidopsis thaliana plants. Comptes Rendus del Academie des Sciences, 316: 1194–1199.

Borrill P., Harrington S. A., and Uauy C. (2019). Applying the latest advances in genomics and phenomics for trait discovery in polyploid wheat. The Plant Journal, 97: 56–72.

Bratic A., Majic D. B., Miljus J. D., Jovanovic Z. S., and Maksimovic V. R. (2007). In planta transformation of buckwheat (Fagopyrum esculentum Moench). Archives of Biological Science, 59: 135–138.

Chakrabarty R., Viswakarma N., Bhat S. R., Kirti P. B., Singh B. D., and Chopra V. L. (2002). Agrobacterium-mediated transformation of cauliflower: optimization of protocol and development of Bt-transgenic cauliflower. Journal of Biosciences, 27: 495–502.

Cheng M., Fry J. E., Pang S., Zhou H., Hironaka M., Duncan R., Conner W., and Wan Y. (1997). Genetic transformation of wheat mediated by Agrobacterium tumefaciens. Plant Physiology, 115: 971–980.

Chumakov M. I., Rozhok N. A., Velikov V. A., Tyrnov V. S., and Volokhina I. V. (2006). Agrobacterium-mediated in planta transformation of maize via pistil filaments. Russian Journal of Genetics, 42: 893–897.

Desfeux C., Clough S. J., and Bent A. F. (2000). Female reproductive tissues are the primary target of Agrobacterium-mediated transformation by the Arabidopsis Floral-Dip method. Plant Physiology, 123: 895–904.

Dutt M., Vasconcellos M., and Grosser J. W. (2011). Effects of antioxidants on Agrobacterium-mediated transformation and accelerated production of transgenic plants of Mexican lime (Citrus aurantifolia Swingle). Plant Cell, Tissue and Organ Culture, 107: 79–89.

FAO (2021). FAO Cereal Supply and demands. [online] Available: http://www.fao.org/worldfoodsituation/csdb/en/.

Fierer N., and Jackson R. B. (2006). The diversity and biogeography of soil bacterial communities. Proceedings of the National Academy of Sciences USA, 103: 626–631.

Finnegan E. J., Peacock W. J., and Dennis E. S. (2000). DNA methylation a key regulator of plant development and other processes. Current Opinion in Genetic and Development, 102: 17–223.

Fullner K. J., Lara J. C., and Nester E. W. (1996). Pilus assembly by Agrobacterium T-DNA transfer genes. Science, 273: 1107–1109.

Gao C. (2021). Genome engineering for crop improvement and future agriculture. Cell, 184: 1621–1635

Gelvin S. B. (2006). Agrobacterium virulence gene induction. Journal of Molecular Biology, 343: 77–84.

Gelvin, S. B. (2017). Integration of Agrobacterium T-DNA into the plant genome. Annual Review of Genetics, 51: 195–217.

Gharari, Z., Bagheri, K., and Sharafi A. (2020). Establishment of in vitro genetically engineered cultures in Scutellaria orientalis and S. araxensis. Biologia, 75: 2383–2393.

Gheysen G., Angenon G., and Van Montague M. (1998). Agrobacterium mediated plant transformation: A scientifically intriguing story with significant application. In: Lindsey K. (Ed.), Transgenic Plant Research, Harwood Academic Press, The Netherlands, 1–33.

Godwin I., Todd G., Ford-Lloyd B., and Newbury H. G. (1991). The effects of acetosyringone and pH on Agrobacterium-mediated transformation vary according to plant species. Plant Cell Reports, 9: 671–675.

Gould J. (1996). Transformation of the cereals using Agrobacterium. Journal of Molecular Biology, 62: 491–501.

Gurel S., Gurel E., and Kaur R. (2009). Efficient, reproducible Agrobacterium-mediated transformation of sorghum using heat treatment of immature embryos. Plant Cell Reports, 28: 429–444.

Hamilton C. M., Frary A., Lewis C., and Tanksley S. D. (1996). Stable transfer of intact high molecular weight DNA into plant chromosomes. Proceedings of the National Academy of Sciences USA, 93: 9975–9979.

Hansen G., and Wright M. S. (1999). Recent advances in the transformation of plants. Trends in Plant Sciences, 4: 226–231.

Hayta S., Smedley M. A., Clarke M., Forner M., and Harwood W. A. (2021). An efficient Agrobacterium-mediated transformation protocol for hexaploid and tetraploid wheat. Current Protocols, 1: e58.

Hiei Y., Komari T., and Kubo T. (1997). Transformation of rice mediated by Agrobacterium tumefaciens. Plant Molecular Biology, 35: 205–218.

Hu X., Zhao J., DeGrado W. F., and Binns A. N. (2013). Agrobacterium tumefaciens recognizes its host environment using ChvE to bind diverse plant sugars as virulence signals. Proceedings of the National Academy of Sciences USA, 110: 678–683.

Hwang H. H., Yu M., and Lai E. M. (2017). Agrobacterium-mediated plant transformation: biology and applications. In: Somerville C., and Meyerowitz E. (Eds.), The Arabidopsis Book. DOI: 10.1199/tab.0186.

Ishida Y., Tsunashima M., Hiei Y., and Komari T. (2015). Wheat (Triticum aestivum L.) transformation using immature embryos. In: Wang K. (Ed.), Agrobacterium Protocols, New York: Springer Business Media, 1: 189–198.

Jefferson R. A., Kavanagh T. A., and Bevan M. W. (1987). GUS fusions: beta-glucuronidase as a sensitive and versatile gene fusion marker in higher plants. The European Molecular Biology Organization Journal, 6: 3901–3907.

Kim H. A., Utomo S. D., Kwon S. Y., Min S. R., Kim J. S., Yoo H. S., and Choi P. S. (2009). The development of herbicide-resistant maize: stable Agrobacterium-mediated transformation of maize using explants of type II embryogenic calli. Plant Biotechnology Reports, 3: 277–283.

Lai E. M. (1998). Processed VirB2 is the major subunit of the promiscuous pilus of Agrobacterium tumefaciens. Journal of Bacteriology, 180: 2711–2717.

Lai E., Chesnokova M. O., Banta L. M., and Kado C. I. (2000). Genetic and environmental factors affecting T-pilin export and T-pilus biogenesis in relation to flagellation of Agrobacterium tumefaciens. Journal of Bacteriology, 182: 3705–3716.

Larkin P. J., and Scoweroft W. R. (1982). Somaclonal variation a novel source of variability from cell culture for plant improvement. Theoretical and Applied Genetics, 60: 197–214.

Li L., Jia Y., Hou Q., Charles T. C., Nester E. W., and Pan S. Q. (2002). A global pH sensor: Agrobacterium sensor protein ChvG regulates acid-inducible genes on its two chromosomes and Ti plasmid. Proceedings of the National Academy of Sciences USA, 99: 12369–12374.

Lin J., Zhou B., Yang Y., and Liu X. (2009). Piercing and vacuum in filtration of mature embryo: a simplified method for Agrobaterium-mediated transformation of indica rice. Plant Cell Report, 28: 1065–1074.

Livak K. J., and Schmittgen T. D. (2001). Analysis of relative gene expression data using real-time quantitative PCR and the 2−^ΔΔCt method. Methods, 25: 402–408.

Mayavan S., Subramanyam K., Arun M., Rajesh M., Kapil D. G., Sivanandhan G., Jaganath B., Manickavasagam M., Selvaraj N., and Ganapathi A. (2013). Agrobacterium tumefaciens-mediated in planta seed transformation strategy in sugarcane. Plant Cell Report, 32: 1557–1574.

Miki B., and McHugh S. (2004). Selectable marker genes in transgenic plants: applications, alternatives and biosafety. Journal of Biotechnology, 107: 193–232.

Ming-Bo W., and Waterhouse P. M. (1997). A rapid and simple method of assaying plants transformed with hygromycin or ppt resistance genes. Plant Molecular Biology Reporter, 15: 209–215.

Mohan J. S. (2001). Tissue culture-derived variation in crops improvement. Journal of Plant Breeding, 118: 153–160.

Murray M. G., and Thomson W. F. (1980). Rapid isolation of high molecular weight plant DNA. Nucleic Acid Research, 8: 4321–4325.

Mysore, K. S., Bassuner, B., Deng X. B., Darbinian N. S., Motchoulski A., Ream W., and Gelvin S. B. (1998). Role of the Agrobacterium tumefaciens VirD2 protein in T-DNA transfer and integration. Molecular Plant-Microbe Interactions, 11: 668–683.

Nanasato Y., and Tabei Y. (2020). A method of transformation and current progress in transgenic research on cucumbers and Cucurbita species. Plant Biotechnology, 37(2): 141–146. DOI: 10.5511/plantbiotechnology.20.0225a.

Naseri G., Sohani M. M., Pourmassalehgou A., and Allahi S. (2012). In planta transformation of rice (Oryza sativa L.) using thaumatin-like protein gene for enhancing resistance to sheath blight. African Journal of Biotechnology, 11: 7885–7893.

Ortiz J. P. A., Reggiardo M. I., Ravizzini R. A., Altabe S. G., Cervigni G. D., Spitteler M. A., and Vallejos R. H. (1996) Hygromycin resistance as an efficient selectable marker for wheat stable transformation. Plant Cell Reports, 15: 877–881.

Park S. I., Kim H. B., Jeon H. J., and Kim H. (2021). Agrobacterium-mediated Capsicum annuum gene editing in two cultivars, hot pepper CM334 and bell pepper dempsey. International Journal of Molecular Sciences, 22: 3921.

Pazuki A., Asghari J., Sohani M. M., Pessarakli M., and Aflaki F. (2015). Effects of some organic nitrogen sources and antibiotics on callus growth of indica rice cultivars. Journal of Plant Nutrition, 38: 1231–1240.

Raineri D. M., Boulton M. I., Davies J. W., and Nester E. W. (1993). VirA, the plant-signal receptor, is responsible for the Ti plasmid-specific transfer of DNA to maize by Agrobacterium. Proceedings of the National Academy of Sciences USA, 90: 3549–3553.

Risacher T., Craze M., Bowden S., Paul W., and Barsby T. (2009). Highly efficient Agrobacterium-mediated transformation of wheat via in planta inoculation. In: Jones H. D., and Shewry P. R. (Eds.), Transgenic Wheat, Barley and Oats, New York: Humana Press, 115–124.

Sedaghati B., Haddad R., and Bandehpour M. (2021). Development of an efficient in planta Agrobacterium-mediated transformation method for Iranian purslane (Portulaca oleracea L.) using sonication and vacuum infiltration. Acta Physiologiae Plantarum, 43(2): 1–9.

Singh P. S., Kumar K. S., Agarwal N., Paliwal S., and Kumar D. D. (2015). Genetic transformation of wheat: an update on recent progresses. Trends in Biosciences, 8: 5443–5457.

Smedley M. A., Hayta S., Clarke M., and Harwood W. A. (2021). CRISPR-Cas9 based genome editing in wheat. Current Protocols, 1(3): e65.

Sparks C. A., Doherty A., and Jones H. (2014). Genetic transformation of wheat via Agrobacterium-mediated DNA delivery. In: Henry R. J., and Furtado A. (Eds.), Cereal Genomics: Methods and Protocols, New York: Springer Business Media, 235–250.

Srinivasan R., and Gothandam K. M. (2016). Synergistic action of D-glucose and acetosyringone on Agrobacterium strains for efficient Dunaliella transformation. PLoS One, 11(6): e0158322.

Subramanyam K., Rajesh M., and Jaganath B. (2013). Assessment of factors influencing the Agrobacterium mediated in planta seed transformation of brinjal (Solanum melongena L.). Applied Biochemistry and Biotechnology, 171: 450–468.

Subramanyam K., Subramanyam K., Sailaja K. V., Srinivasulu M., and Lakshmidevi K. (2011). Highly efficient Agrobacterium-mediated transformation of banana cv. Rasthali (AAB) via sonication and vacuum infiltration. Plant Cell Reports, 30: 425–436.

Takata N., and Eriksson M. E. (2012). A simple and efficient transient transformation for hybrid aspen (Populus tremula×P. tremuloides). Plant Methods, 8: 30.

Thompson M. G., Moore W. M., Hummel N. F., Pearson A. N., Barnum C. R., Scheller H. V., and Shih P. M. (2020). Agrobacterium tumefaciens: A bacterium primed for synthetic biology. BioDesign Research, Article ID: 8189219. DOI: doi.org/10.3390/ijms22083921.

Tinland B., Schoumacher F., Gloeckler V., Bravo-Angel A. M., and Hohn B. (1995). The Agrobacterium tumefaciens virulence D2 protein is responsible for precise integration of T-DNA into the plant genome. The European Molecular Biology Organization Journal, 14: 3585–3595.

Villemont E., Dubois F., Sangwan R. S., Vasseur G., Bourgeois Y., and Sangwan-Norreel B. S. (1997). Role of the host cell cycle in the Agrobacterium-mediated genetic transformation of Petunia: evidence of an S-phase control mechanism for T-DNA transfer. Planta, 201: 160–172.

Vitha, S. (2007). Histochemical localization of β-glucuronidase (GUS) reporter activity in plant tissues. Microscopy and Imaging Center, Texas A & M University, College Station, TX, USA.

Wise A. A., Liu Z., and Binns A. N. (2006). Three methods for the introduction of foreign DNA into Agrobacterium. In: Wang K. (Ed.), Agrobacterium Protocols, New York: Humana Press, 43–54.

Wroblewski T., Tomczak A., and Michelmore R. (2005). Optimization of Agrobacterium-mediated transient assays of gene expression in lettuce, tomato and Arabidopsis. Plant Biotechnology Journal, 3: 259–273.

Xu K., Huang X., Wu M., Wang Y., Chang Y., Liu K., Zhang, J., Zhang Y., Zhang F., Yi L., and Li T. (2014). A rapid, highly efficient and economical method of Agrobacterium-mediated in planta transient transformation in living onion epidermis. PLoS One, 9(1): e83556.

Ziemienowicz A., Görlich D., Lanka E., Hohn B., and Rossi L. (1999) Import of DNA into mammalian nuclei by proteins originating from a plant pathogenic bacterium. Proceedings of the National Academy of Sciences USA, 96: 3729–3733.

Ziemienowicz A., Merkle T., Schoumacher F., Hohn B., and Rossi L. (2001). Import of Agrobacterium T-DNA into plant nuclei: two distinct functions of VirD2 and VirE2 proteins. The Plant Cell, 13: 369–383.