Assessing the suitability of SCoT markers for studying genetic variation and genetic structure of Lepidium species

Azizi Jalilian M., Shayesteh K., Danehkar A., and Salmanmahiny A. (2020). A new ecosystem-based land classification of Iran for conservation goals. Environmental Monitoring and Assessment, 192(182). DOI: 10.1007/s10661-020-8145-1.

Bansal D., Bhasin P., Yadav O. P., and Punia A. (2012). Assessment of genetic diversity in Lepidium sativum (Chandrasur) a medicinal herb used in folklore remedies in India using RAPD. Journal of Genetic Engineering and Biotechnology, 10(1): 39-45.

Baregama Ch., and Goyal A. (2019). Phytoconstituents, pharmacological activity, and medicinal use of Lepidium sativum Linn.: a review. Asian Journal of Pharmaceutical and Clinical Research, 12(4): 45-50.

Beyene Y., Botha A. M., and Myburg A. A. (2005). A comparative study of molecular and morphological methods of describing genetic relationships in traditional Ethiopian highland maize. African Journal of Biotechnology, 4(7): 586-595.

Bhalala K. C., Kapadia V. N., Kundariya V. B., and Patel M. A. (2016). Assessment of genetic diversity in garden cress (Lepidium sativum L.) using SSR markers. Advanced Life Sciences, 5: 64-69.

Bona M. (2014). Taxonomic revision of Lepidium (Brassicaceae) from Turkey. Journal of the Faculty of Pharmacy of İstanbul Üniversity, 44: 31-62.

Botstein D., White R. L., Skolnick M., and Davis R. W. (1980). Construction of a genetic linkage map in man using restriction fragment length polymorphisms. The American Journal of Human Genetics, 32(3): 314-331.

Chesnokov Y. V., and Artemyeva A. M. (2015). Evaluation of the measure of polymorphism information of genetic diversity. Agricultural Biology, 50: 571-578.

Collard B. C. Y., and Mackill D. J. (2009). Start Codon Targeted (SCoT) polymorphism: A simple, novel DNA marker technique for generating gene–targeted markers in plants. Plant Molecular Biology Reporter, 27: 86-93.

Evanno G., Regnaut S., and Goudet J. (2005). Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Molecular Ecology, 14: 2611-2620.

Fallahi M., Mohammadi A., and Miri S. M. (2020). The natural variation in six populations of Calendula officinalis L.: A karyotype study. Journal of Genetic Resources, 6(1): 34-40.

 Frye C. T., and Neel M. C. (2017). Benefits of gene flow are mediated by individual variability in self compatibility in small isolated populations of an endemic plant species. Evolutionary Applications, 10: 551-562.

German D. A. (2014). Taxonomic remarks on some Asian Lepidium s. l. (Brassicaceae). Phytotaxa, 186: 97-105.

Govindaraj M., Vetriventhan M., and Srinivasan M. (2015). Importance of genetic diversity assessment in crop plants and its recent advances: an overview of its analytical perspectives. Genetics Research International, 2015: Article ID 431487.

Grover A., and Sharma P. C. (2016). Development and use of molecular markers: past and present. Critical Reviews in Biotechnology, 36(2): 290-302.

Hutchison D. W., and Templeton A. R. (1999). Correlation of pairwise genetic and geographic distance measures: inferring the relative influences of gene flow and drift on the distribution of genetic variability. Evolution, 53: 1898-1914.

Jelvehgar N., Miri S. M., Mostafavi Kh., and Mohammadi A. (2021). Genetic analysis of Lepidium spp. by SSR and ISSR molecular markers. Plant Gene, 28(100332).

Kaur T., Hussain K., Koul S., Vishwakarma R., and Vyas D. (2013). Evaluation of nutritional and antioxidant status of Lepidium latifolium Linn.: a novel phytofood from Ladakh. PLoS One, 8(8): e69112.

Kumar S., Goyal R., Sheorayan A., Kajla S., Yadav O. P., and Mangal M. (2012). Assessment of genetic diversity in Lepidium sativum using RAPD and ISSR markers. Annals of Biology, 28(2): 93-97.

Kumar V., and Yadav H. K. (2019). Assessment of genetic diversity in Lepidium sativum L. using inter simple sequence repeat (ISSR) marker. Physiology and Molecular Biology of Plants, 25: 399-406.

Ma J. B., Wang T., Wang X. R., Zhong J. B., Su X., and Du Y. R. (2020). Phylogenetic relationships of two representative Lepidium species (Brassicaceae) in Qinghai province. Pakistan Journal of Botany, 52(5): 1673-1677.

Mohammed S., and Tesfaye K. (2015). Molecular genetic diversity study of Lepidium sativum population from Ethiopia as revealed by inter simple sequence repeat (ISSR) markers. African Journal of Biotechnology, 14: 1461-1470.

Mahomoodally M. F., Zengin G., Aumeeruddy M. Z., Sezgin M., and Aktumsek A. (2018). Phytochemical profile and antioxidant properties of two Brassicaceae species: Cardaria draba subsp. draba and Descurainia sophia. Biocatalysis and Agricultural Biotechnology, 16: 453-458.

Nadeem M. A., Nawaz M. A., Shahid M. Q., Doğan Y., Comertpay G., Yıldız M., Hatipoğlu R., Ahmad F., Alsaleh A., Labhane N., Özkan H., Chung G., and Baloch F. Sh. (2018). DNA molecular markers in plant breeding: current status and recent advancements in genomic selection and genome editing. Biotechnology & Biotechnological Equipment, 32(2): 261-285.

Nasseh Y., and Joharchi M. R. (2019). A new record of Lepidium (Brassicaceae) for the flora of Iran. Nova Biologica Reperta, 6: 347-351.

Pathirana R., and Carimi F. (2022). Management and utilization of plant genetic resources for a sustainable agriculture. Plants, 11(2038).

Ramadan M. F., and Oraby H. F. (2020). Lepidium sativum seeds: therapeutic significance and health-promoting potential. In Preedy V. R., and Watson R. R. (Eds.), Nuts and seeds in health and disease prevention, Academic Press, 273-289.

Ramanatha Rao V., and Hodgkin T. (2002). Genetic diversity and conservation and utilization of plant genetic resources. Plant Cell, Tissue and Organ Culture, 68: 1-19.

Robin E., Houliston G. J., and Heenan P. B. (2014). Genetic and morphological variation of two rare species of Lepidium (Brassicaceae) on Mangere Island, Chatham Islands, and implications for their conservation management. Folia Geobotanica, 49: 209-221.

Roughani A., and Miri S. M. (2018). Lepidium species as antidiabetic herbal medicines. Proceedings of the First National Congress and International Fair of Medicinal Plants and Strategies for Persian Medicine that Affect Diabetes, October 9-11, Mashhad, Iran.

Roughani A., Miri S. M., Hassandokht M. R., Moradi P., and Abdossi V. (2018a). Agro–morphological study on several accessions of garden cress (Lepidium sativum–Brassiaceae) in Iran. Pakistan Journal of Botany, 50: 655-660.

Roughani A., Miri S. M., Hassandokht M. R., Moradi P., and Abdossi V. (2018b). Genetic variation within Iranian Lepidium species using morphological traits. Proceedings of the First National Congress and International Fair of Medicinal Plants and Strategies for Persian Medicine that Affect Diabetes, October 9-11, Mashhad, Iran.

Roughani A., Miri S. M., Hassandokht M. R., Moradi P., and Abdossi V. (2018c). Morphological variation of some Lepidium draba and L. latifolium populations. Taiwania, 63: 41-48.

Roughani A., Miri S. M., Hassandokht M. R., Moradi P., and Abdossi V. (2021). Cytogenetic and micro–morphological studies on several accessions of some Lepidium L. species in Iran. Iranian Journal of Science and Technology Transaction A-science, 45: 417-426.

Sandeep C., Kumar A., Rodrigues V., Viswanath S., Shukla A. K., and Sundaresan V. (2020). Morpho-genetic divergence and population structure in Indian Santalum album L. Trees, 34: 1113-1129.

Sankhla A. K, Malik C. P., and Parashar M. (2015). A review on Start Codon Targeted (SCoT) marker. Journal of Plant Science and Research, 31(2): 153-160.

Shamsolshoara Y., Javadi, H., and Miri S. M. (2020). Karyomorphological study of seven species of the genus Astragalus from Iran. The Iranian Journal of Botany, 26(2): 172-178.

Singh B., Jain D., Joshi A., Namrata, Dodiya N. S., Chauhan S., Mittal J., and Singh A. (2020). Molecular diversity analysis and metabolic profiling of seed oil in Lepidium sativum L. genotypes. Plant Molecular Biology Reporter, 38: 641-654.

Tadesse L., Mekbib F., Wakjira A., and Tadele, Z. (2018). Genetic diversity in the Ethiopian garden cress (Lepidium sativum L.) using microsatellite markers. Current Plant Biology, 16: 32-40.

Velasco-Ramírez A. P., Torres-Morán M. I., Molina-Moret S., Sánchez-González J de J., and Santacruz-Ruvalcaba F. (2014). Efficiency of RAPD, ISSR, AFLP and ISTR markers for the detection of polymorphisms and genetic relationships in camote de cerro (Dioscorea spp.). Electronic Journal of Biotechnology, 17: 65-71.

Wright S. (1978). Evolution and genetics of population. Chicago: The University of Chicago Press.

Yang S., Xue S., Kang W., Qian Z., and Yi Z. (2019). Genetic diversity and population structure of Miscanthus lutarioriparius, an endemic plant of China. PLoS One, 14(2): e0211471.

Zhang Y., Yan H., Jiang X., Wang X., Huang L., Xu B., Zhang X., and Zhang L. (2016). Genetic variation, population structure and linkage disequilibrium in Switchgrass with ISSR, SCoT and EST–SSR markers. Hereditas, 153(4).